RDKit
Open-source cheminformatics and machine learning.
- c -
CachedMolHolder() :
RDKit::CachedMolHolder
CachedSmilesMolHolder() :
RDKit::CachedSmilesMolHolder
CachedTrustedSmilesMolHolder() :
RDKit::CachedTrustedSmilesMolHolder
calcAnnotationPosition() :
RDKit::MolDraw2D_detail::DrawMol
calcCentre() :
RDKit::MolDraw2D_detail::StringRect
calcChiralVolume() :
DistGeom::ChiralViolationContrib
calcCorners() :
RDKit::MolDraw2D_detail::StringRect
calcDoubleBondLines() :
RDKit::MolDraw2D_detail::DrawMol
calcEnergy() :
ForceFields::ForceField
calcExplicitValence() :
RDKit::Atom
calcGlyphBBox() :
RDKit::MolDraw2D_detail::DrawTextFT
calcGrad() :
ForceFields::ForceField
calcImplicitValence() :
RDKit::Atom
calcMeanBondLength() :
RDKit::MolDraw2D_detail::DrawMol
calcMetricMatrix() :
RDDataManip::MetricMatrixCalc< vectType, entryType >
calcMolNotePosition() :
RDKit::MolDraw2D_detail::DrawMol
calcRadicalRect() :
RDKit::MolDraw2D_detail::DrawMol
calcSymbolEllipse() :
RDKit::MolDraw2D_detail::DrawMolMCH
calcTripleBondLines() :
RDKit::MolDraw2D_detail::DrawMol
calculateScale() :
RDKit::MolDraw2D_detail::DrawMol
canGrowBiggerThan() :
RDKit::FMCS::Seed
canon_atom() :
RDKit::Canon::canon_atom
canonicalize() :
RDKit::MolStandardize::TautomerEnumerator
canonicalizeOrientation() :
RDDepict::EmbeddedFrag
canSerialize() :
RDKit::CustomPropHandler
,
RDKit::DataStructsExplicitBitVecPropHandler
CartesianProduct() :
RDKit::CartesianProduct
CartesianProductStrategy() :
RDKit::CartesianProductStrategy
Catalog() :
RDCatalog::Catalog< entryType, paramType >
changeRoot() :
RDKit::CIPLabeler::Digraph
changeToDrawCoords() :
RDKit::MolDraw2D_detail::DrawMol
ChargeCorrection() :
RDKit::MolStandardize::ChargeCorrection
ChargeFix() :
RDKit::StructureCheck::ChargeFix
checkAllBondsToAttachmentPointPresent() :
RDKit::RCore
checkForEnd() :
RDKit::ForwardSDMolSupplier
checkIfMatchAndAppend() :
RDKit::FMCS::MaximumCommonSubgraph
checkMolStructure() :
RDKit::StructureCheck::StructChecker
checkValid() :
DistGeom::BoundsMatrix
ChemicalFeature() :
ChemicalFeatures::ChemicalFeature
ChemicalReaction() :
RDKit::ChemicalReaction
ChemicalReactionException() :
RDKit::ChemicalReactionException
ChemicalReactionParserException() :
RDKit::ChemicalReactionParserException
ChiralAtomCompareFunctor() :
RDKit::Canon::ChiralAtomCompareFunctor
ChiralSet() :
DistGeom::ChiralSet
ChiralViolationContrib() :
DistGeom::ChiralViolationContrib
choose() :
RDKit::MolStandardize::LargestFragmentChooser
chromosomeLength() :
RDKit::RGroupGa
CIPMol() :
RDKit::CIPLabeler::CIPMol
CIPMolIter() :
RDKit::CIPLabeler::CIPMolSpan< T, U >::CIPMolIter
CIPMolSpan() :
RDKit::CIPLabeler::CIPMolSpan< T, U >
cleanup() :
RDKit::FPBReader
cleanup_rdvalue() :
RDKit::RDValue
CleanupParameters() :
RDKit::MolStandardize::CleanupParameters
clear() :
Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
RDKit::FingerprintVarianceScoreData
,
RDKit::FMCS::DuplicatedSeedCache
,
RDKit::FMCS::RingMatchTableSet
,
RDKit::FMCS::SeedSet
,
RDKit::FMCS::TargetMatch
,
RDKit::FMCS::TArray2D< T >
,
RDKit::RDProps
,
RDKit::RWMol
,
RDKit::StructureCheck::StructCheckerOptions
,
RDKit::Trajectory
clearAllAtomBookmarks() :
RDKit::ROMol
clearAllBondBookmarks() :
RDKit::ROMol
clearAtomBookmark() :
RDKit::ROMol
clearAttachPoints() :
RDKit::SubstanceGroup
clearBits() :
BitVect
,
ExplicitBitVect
,
SparseBitVect
clearBondBookmark() :
RDKit::ROMol
clearBrackets() :
RDKit::SubstanceGroup
clearCache() :
RDKit::MolChemicalFeature
clearComputedProps() :
RDKit::RDProps
,
RDKit::ROMol
clearConformers() :
RDKit::ROMol
clearCStates() :
RDKit::SubstanceGroup
clearDrawing() :
RDKit::MolDraw2D
,
RDKit::MolDraw2DCairo
,
RDKit::MolDraw2DJS
,
RDKit::MolDraw2DQt
,
RDKit::MolDraw2DSVG
,
RDKit::MolDraw2Dwx
clearProp() :
RDKit::FilterCatalogEntry
,
RDKit::FragCatalogEntry
,
RDKit::MolCatalogEntry
,
RDKit::RDProps
ClearTee() :
boost::logging::rdLogger
clearTieStore() :
RDKit::RGroupScorer
clearVal() :
RDKit::Dict
clone() :
RDKit::AtomInvariantsGenerator
,
RDKit::AtomPair::AtomPairAtomInvGenerator
,
RDKit::BondInvariantsGenerator
,
RDKit::CustomPropHandler
,
RDKit::DataStructsExplicitBitVecPropHandler
Clone() :
RDKit::FilterMatcherBase
clone() :
RDKit::MorganFingerprint::MorganAtomInvGenerator
,
RDKit::MorganFingerprint::MorganBondInvGenerator
,
RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator
,
RDKit::RDKitFP::RDKitFPAtomInvGenerator
close() :
RDKit::MolSupplier
,
RDKit::MolWriter
,
RDKit::PDBWriter
,
RDKit::SDWriter
,
RDKit::SmilesWriter
,
RDKit::TDTWriter
cluster() :
RDPickers::HierarchicalClusterPicker
collectVotes() :
RDInfoTheory::BitCorrMatGenerator
colour() :
RDKit::MolDraw2D
,
RDKit::MolDraw2D_detail::DrawText
commitBatchEdit() :
RDKit::RWMol
commonArgumentsString() :
RDKit::FingerprintArguments< OutputType >
compact() :
RDPickers::LeaderPickerState< T >
compact_next() :
RDPickers::LeaderPickerState< T >
compare() :
RDKit::Canon::bondholder
,
RDKit::CIPLabeler::Rule1a
,
RDKit::CIPLabeler::Rule1b
,
RDKit::CIPLabeler::Rule2
,
RDKit::CIPLabeler::Rule3
,
RDKit::CIPLabeler::Rule4a
,
RDKit::CIPLabeler::Rule4b
,
RDKit::CIPLabeler::Rule4c
,
RDKit::CIPLabeler::Rule5
,
RDKit::CIPLabeler::Rule5New
,
RDKit::CIPLabeler::Rule6
,
RDKit::CIPLabeler::Rules
,
RDKit::CIPLabeler::SequenceRule
compareParams() :
RDGeom::UniformGrid3D
compareStereo() :
RDKit::Canon::bondholder
compareTo() :
RDKit::CIPLabeler::PairList
Composition2N() :
RDKit::FMCS::Composition2N
compute2N() :
RDKit::FMCS::Composition2N
computeBox() :
RDDepict::EmbeddedFrag
computeCostMatrix() :
RDKit::MolAlign::LAP
computeDistMat() :
RDDepict::EmbeddedFrag
computeKey() :
RDKit::FMCS::SubstructureCache::HashKey
computeMinCostPath() :
RDKit::MolAlign::LAP
computeMMFFCharges() :
RDKit::MMFF::MMFFMolProperties
computeProperties() :
RDKit::Descriptors::Properties
computeRemainingSize() :
RDKit::FMCS::Seed
computeRingMatchTable() :
RDKit::FMCS::RingMatchTableSet
Configuration() :
RDKit::CIPLabeler::Configuration
Conformer() :
RDKit::Conformer
ConformerException() :
RDKit::ConformerException
ConicToFunctionImpl() :
RDKit::MolDraw2D_detail::DrawTextFT
,
RDKit::MolDraw2D_detail::DrawTextFTCairo
,
RDKit::MolDraw2D_detail::DrawTextFTJS
,
RDKit::MolDraw2D_detail::DrawTextFTQt
,
RDKit::MolDraw2D_detail::DrawTextFTSVG
ConrecSegment() :
conrec::ConrecSegment
const_iterator() :
RDKit::MolStandardize::TautomerEnumeratorResult::const_iterator
ConstBondIterator_() :
RDKit::ConstBondIterator_
contribs() :
ForceFields::ForceField
copy() :
DistGeom::ChiralViolationContrib
,
DistGeom::DistViolationContrib
,
DistGeom::FourthDimContrib
,
ForceFields::CrystalFF::TorsionAngleContribM6
,
ForceFields::ForceFieldContrib
,
ForceFields::MMFF::AngleBendContrib
,
ForceFields::MMFF::AngleConstraintContrib
,
ForceFields::MMFF::BondStretchContrib
,
ForceFields::MMFF::DistanceConstraintContrib
,
ForceFields::MMFF::EleContrib
,
ForceFields::MMFF::OopBendContrib
,
ForceFields::MMFF::PositionConstraintContrib
,
ForceFields::MMFF::StretchBendContrib
,
ForceFields::MMFF::TorsionAngleContrib
,
ForceFields::MMFF::TorsionConstraintContrib
,
ForceFields::MMFF::VdWContrib
,
ForceFields::UFF::AngleBendContrib
,
ForceFields::UFF::AngleConstraintContrib
,
ForceFields::UFF::BondStretchContrib
,
ForceFields::UFF::DistanceConstraintContrib
,
ForceFields::UFF::InversionContrib
,
ForceFields::UFF::PositionConstraintContrib
,
ForceFields::UFF::TorsionAngleContrib
,
ForceFields::UFF::TorsionConstraintContrib
,
ForceFields::UFF::vdWContrib
,
Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::EqualityQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::GreaterEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::GreaterQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::LessEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::LessQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::OrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::RangeQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
Queries::XOrQuery< MatchFuncArgType, DataFuncArgType, needsConversion >
,
RDGeom::Point2D
,
RDGeom::Point3D
,
RDGeom::Point
,
RDGeom::PointND
,
RDKit::Atom
,
RDKit::AtomKekulizeException
,
RDKit::AtomMonomerInfo
,
RDKit::AtomPDBResidueInfo
,
RDKit::AtomRingQuery
,
RDKit::AtomSanitizeException
,
RDKit::AtomValenceException
,
RDKit::Bond
,
RDKit::CartesianProductStrategy
,
RDKit::EnumerationStrategyBase
,
RDKit::EvenSamplePairsStrategy
,
RDKit::ExclusionList
,
RDKit::FilterHierarchyMatcher
,
RDKit::FilterMatcherBase
,
RDKit::FilterMatchOps::And
,
RDKit::FilterMatchOps::Not
,
RDKit::FilterMatchOps::Or
,
RDKit::HasPropQuery< TargetPtr >
,
RDKit::HasPropWithValueQuery< TargetPtr, T >
,
RDKit::HasPropWithValueQuery< TargetPtr, ExplicitBitVect >
,
RDKit::HasPropWithValueQuery< TargetPtr, std::string >
,
RDKit::KekulizeException
,
RDKit::MolEnumerator::LinkNodeOp
,
RDKit::MolEnumerator::MolEnumeratorOp
,
RDKit::MolEnumerator::PositionVariationOp
,
RDKit::MolEnumerator::RepeatUnitOp
,
RDKit::MolSanitizeException
,
RDKit::MolStandardize::FragmentValidation
,
RDKit::MolStandardize::IsotopeValidation
,
RDKit::MolStandardize::MolVSValidations
,
RDKit::MolStandardize::NeutralValidation
,
RDKit::MolStandardize::NoAtomValidation
,
RDKit::QueryAtom
,
RDKit::QueryBond
,
RDKit::RandomSampleAllBBsStrategy
,
RDKit::RandomSampleStrategy
,
RDKit::RecursiveStructureQuery
,
RDKit::SmartsMatcher
copyGene() :
RDKit::RGroupDecompositionChromosome
coreWithMatches() :
RDKit::RCore
countMatches() :
RDKit::SubstructLibrary
countUserRGroups() :
RDKit::RCore
createChromosome() :
RDKit::RGroupGa
createDrawObjects() :
RDKit::MolDraw2D_detail::DrawMol
createFromParent() :
RDKit::FMCS::Seed
createPartialBond() :
RDKit::RWMol
CreateShingling() :
RDKit::MHFPFingerprints::MHFPEncoder
CrippenParamCollection() :
RDKit::Descriptors::CrippenParamCollection
crossProduct() :
RDGeom::Point3D
CubicToFunctionImpl() :
RDKit::MolDraw2D_detail::DrawTextFT
,
RDKit::MolDraw2D_detail::DrawTextFTCairo
,
RDKit::MolDraw2D_detail::DrawTextFTJS
,
RDKit::MolDraw2D_detail::DrawTextFTQt
,
RDKit::MolDraw2D_detail::DrawTextFTSVG
CXXAtomIter() :
RDKit::CXXAtomIterator< Graph, Vertex, Iterator >::CXXAtomIter
CXXAtomIterator() :
RDKit::CXXAtomIterator< Graph, Vertex, Iterator >
CXXBondIter() :
RDKit::CXXBondIterator< Graph, Edge, Iterator >::CXXBondIter
CXXBondIterator() :
RDKit::CXXBondIterator< Graph, Edge, Iterator >
Generated on Sat Jan 14 2023 12:24:33 for RDKit by
1.9.4